Sample |
Reference size (Mbp) |
Throughput mean depth (X) |
De-duplicated reads |
De-duplicated reads % (out of total reads) |
Mappable reads (reads mapped to reference) |
Mappable reads % (out of de-duplicated reads |
Mappable mean depth (X) |
Show Description
- · Reference size (Mbp) : Reference size.
- · Throughput mean depth (X) : {Total yield} / {Reference size}.
- · De-duplicated reads : Number of de-duplicated reads
- · De-duplicated reads %(out of total reads) : 100 * {Number of de-duplicated reads} / {Total reads}.
- · Mappable reads(reads mappaed to reference) : Number of mappable reads.
- · Mappable reads %(out of de-duplicated reads : 100 * {Number of mappable reads} / {Number of de-duplicated reads}.
- · Mappable mean depth (X) : {Mappable yield} / {Reference size}.
Sample |
% >= 1X coverage |
% >= 5X coverage |
% >= 10X coverage |
% >= 15X coverage |
% >= 20X coverage |
% >= 30X coverage |
Show Description
- · % Coverage : The percentage of bases in target regions with a depth of coverage or greater.
Sample |
Fragment length median |
Standard deviation |
Show Description
- · Fragment length median : Median of fragment lengths.
- · Standard deviation : Standard deviation of fragment length.